If not with 2x or 3x magnification, then certainly with 10x... ;-)
There is an easy rule: If you see the flaws with your eyes only, and it disturbes you, let it be changed.
If you don't see it with your eyes, chances are high, that with the improvement of this flaw, you'll get other ones... ;-)
My opinion regarding the marks:
-The scratch on the rotor. Really small scratch. Should not happen, agreed, (especially not at PP) but it is indeed small.
-The marks on the dial: What I find strange: the mark below the 9 and the mark above the nine, can only be seen on one of the photos and not on both! Again: it is there with 3x magnifying, without probably not...
If you put the watch into the save, it will probably stay like that. If you wear the watch regularly, you will certainly have bigger marks before summer is back in 2017. Certainly you will have micro scratches from tissues, cloths, dust... With your magnifying glass they will look horrible... ;-)
Be happy with that marvelous watch. Don't let it happen, that you do not enjoy it!! ;-)